Here’s how to create a cert/csr with more than one domain name.

First you’ll want to create the directory.
I use NGiNX so I like to put my certs in /etc/nginx/ssl, but you can put yours anywhere
So now we will create the directory mkdir /etc/nginx/ssl/domainName
Now we will cd into the directory cd /etc/nginx/ssl/domainName
Now we will paste the following in the sslConfig.txt file.

[req]
default_bits = 4096
prompt = no
default_md = sha256
req_extensions = req_ext
distinguished_name = dn

[ dn ]
C=US
ST=YOURstateHERE
L=YOURcityHERE
O=YOURorgNAMEhere
CN = YOURmainDOMAINhere

[ req_ext ]
subjectAltName = @alt_names

[ alt_names ]
DNS.1 = YOURmainDOMAINhere
DNS.2 = YOURaltDOMAINhere

Now we will create the key and csr
I like to create simple files like key and csr and crt since I keep the domain files in their own directory
openssl genrsa -out key 4096
openssl req -new -key key -out csr -config sslConfig.txt

Now this will give you the key and csr. Now you view the csr using cat
cat csr
You can then paste this data into the page where you’re getting your SSL cert from

I recommend using acme.sh for LetsEncrypt as it’s automatic and very easy AND FREE.
You can find that HERE.